IL_2VQF_046
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 2VQF|1|A|U|1257, 2VQF|1|A|U|1278, 2VQF|1|A|A|1280, 2VQF|1|A|U|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQF_046 not in the Motif Atlas
- Homologous match to IL_6CZR_161
- Geometric discrepancy: 0.3793
- The information below is about IL_6CZR_161
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.1
- Basepair signature
- cWW-cSS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
2VQF|1|A|G|1255
2VQF|1|A|A|1256
2VQF|1|A|U|1257
2VQF|1|A|G|1258
*
2VQF|1|A|C|1277
2VQF|1|A|U|1278
2VQF|1|A|A|1279
2VQF|1|A|A|1280
2VQF|1|A|U|1281
2VQF|1|A|C|1282
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain N
- 30S RIBOSOMAL PROTEIN S14 TYPE Z
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