IL_2YKR_001

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UUGA*UAA

Length

7 nucleotides

Bulged bases

2YKR|1|A|G|31

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_001 not in the Motif Atlas

Geometric match to IL_7A0S_042

Geometric discrepancy: 0.3855

The information below is about IL_7A0S_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

2YKR|1|A|U|29
2YKR|1|A|U|30
2YKR|1|A|G|31
2YKR|1|A|A|32
*
2YKR|1|A|U|552
2YKR|1|A|A|553
2YKR|1|A|A|554

Current chains

Chain A

16S RRNA

Nearby chains

Chain D

30S RIBOSOMAL PROTEIN S4

Chain L

30S RIBOSOMAL PROTEIN S12