IL_2YKR_020

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GUC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_020 not in the Motif Atlas

Geometric match to IL_1L9A_003

Geometric discrepancy: 0.3645

The information below is about IL_1L9A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

2YKR|1|A|G|293
2YKR|1|A|U|294
2YKR|1|A|C|295
*
2YKR|1|A|G|302
2YKR|1|A|A|303
2YKR|1|A|U|304

Current chains

Chain A

16S RRNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12

Chain Q

30S RIBOSOMAL PROTEIN S17