IL_2YKR_047
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2YKR_047 not in the Motif Atlas
- Geometric match to IL_4LFB_033
- Geometric discrepancy: 0.3518
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
2YKR|1|A|C|779
2YKR|1|A|A|780
2YKR|1|A|A|781
2YKR|1|A|A|782
2YKR|1|A|C|783
*
2YKR|1|A|G|799
2YKR|1|A|G|800
2YKR|1|A|U|801
2YKR|1|A|A|802
2YKR|1|A|G|803
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain K
- 30S RIBOSOMAL PROTEIN S11
- Chain U
- 30S RIBOSOMAL PROTEIN S21
Coloring options: