IL_2YKR_055
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- GUG*CAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GUG,CAC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2YKR_055 not in the Motif Atlas
- Geometric match to IL_4E48_003
- Geometric discrepancy: 0.2347
- The information below is about IL_4E48_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
2YKR|1|A|G|951
2YKR|1|A|U|952
2YKR|1|A|G|953
*
2YKR|1|A|C|1228
2YKR|1|A|A|1229
2YKR|1|A|C|1230
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain S
- 30S RIBOSOMAL PROTEIN S19
- Chain W
- PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA
Coloring options: