IL_2YKR_074

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_074 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.3521

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2YKR|1|A|G|1401
2YKR|1|A|C|1402
2YKR|1|A|C|1403
2YKR|1|A|C|1404
*
2YKR|1|A|G|1497
2YKR|1|A|U|1498
2YKR|1|A|A|1499
2YKR|1|A|A|1500
2YKR|1|A|C|1501

Current chains

Chain A

16S RRNA

Nearby chains

Chain E

30S RIBOSOMAL PROTEIN S5

Chain W

PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA