IL_2YKR_078

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_078 not in the Motif Atlas

Geometric match to IL_1SA9_002

Geometric discrepancy: 0.3039

The information below is about IL_1SA9_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

2YKR|1|A|G|1416
2YKR|1|A|G|1417
2YKR|1|A|A|1418
2YKR|1|A|G|1419
*
2YKR|1|A|U|1481
2YKR|1|A|G|1482
2YKR|1|A|A|1483
2YKR|1|A|C|1484

Current chains

Chain A

16S RRNA

Nearby chains