IL_2YKR_110

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2YKR_110 not in the Motif Atlas

Geometric match to IL_9DFE_065

Geometric discrepancy: 0.3225

The information below is about IL_9DFE_065

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

2YKR|1|A|G|654
2YKR|1|A|A|655
*
2YKR|1|A|U|751
2YKR|1|A|G|752
2YKR|1|A|A|753
2YKR|1|A|C|754

Current chains

Chain A

16S RRNA

Nearby chains

Chain H

30S RIBOSOMAL PROTEIN S8

Chain O

30S RIBOSOMAL PROTEIN S15