IL_2ZJP_004
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- ACGAG*CUUUGACU
- Length
- 13 nucleotides
- Bulged bases
- 2ZJP|1|X|U|99
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2ZJP_004 not in the Motif Atlas
- Homologous match to IL_7A0S_004
- Geometric discrepancy: 0.3582
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
2ZJP|1|X|A|80
2ZJP|1|X|C|81
2ZJP|1|X|G|82
2ZJP|1|X|A|83
2ZJP|1|X|G|84
*
2ZJP|1|X|C|96
2ZJP|1|X|U|97
2ZJP|1|X|U|98
2ZJP|1|X|U|99
2ZJP|1|X|G|100
2ZJP|1|X|A|101
2ZJP|1|X|C|102
2ZJP|1|X|U|103
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain R
- 50S RIBOSOMAL PROTEIN L24
- Chain V
- 50S RIBOSOMAL PROTEIN L29
Coloring options: