IL_2ZJP_014
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 2ZJP|1|X|G|814, 2ZJP|1|X|G|818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2ZJP_014 not in the Motif Atlas
- Homologous match to IL_7A0S_015
- Geometric discrepancy: 0.1285
- The information below is about IL_7A0S_015
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
2ZJP|1|X|G|687
2ZJP|1|X|A|688
2ZJP|1|X|A|689
2ZJP|1|X|A|690
2ZJP|1|X|C|691
*
2ZJP|1|X|G|812
2ZJP|1|X|A|813
2ZJP|1|X|G|814
2ZJP|1|X|A|815
2ZJP|1|X|U|816
2ZJP|1|X|A|817
2ZJP|1|X|G|818
2ZJP|1|X|C|819
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain I
- 50S RIBOSOMAL PROTEIN L15
Coloring options: