IL_2ZJP_033

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

2ZJP|1|X|U|1019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_033 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.2086

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_46868.1

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

2ZJP|1|X|U|1015
2ZJP|1|X|C|1016
2ZJP|1|X|C|1017
2ZJP|1|X|C|1018
2ZJP|1|X|U|1019
2ZJP|1|X|A|1020
2ZJP|1|X|A|1021
2ZJP|1|X|A|1022
*
2ZJP|1|X|U|1161
2ZJP|1|X|A|1162

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L13

Chain N

50S RIBOSOMAL PROTEIN L20