IL_2ZJP_044

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

2ZJP|1|X|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_044 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1153

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

2ZJP|1|X|C|1221
2ZJP|1|X|G|1222
2ZJP|1|X|G|1223
2ZJP|1|X|A|1224
2ZJP|1|X|G|1225
2ZJP|1|X|A|1226
2ZJP|1|X|A|1227
2ZJP|1|X|G|1228
*
2ZJP|1|X|U|1247
2ZJP|1|X|G|1248
2ZJP|1|X|G|1249
2ZJP|1|X|A|1250
2ZJP|1|X|G|1251

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L15

Chain N

50S RIBOSOMAL PROTEIN L20

Chain P

50S RIBOSOMAL PROTEIN L22