IL_2ZJP_052

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_052 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.4679

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

2ZJP|1|X|U|1426
2ZJP|1|X|G|1427
2ZJP|1|X|G|1428
2ZJP|1|X|A|1429
2ZJP|1|X|G|1430
*
2ZJP|1|X|C|1598
2ZJP|1|X|G|1599
2ZJP|1|X|U|1600
2ZJP|1|X|U|1601
2ZJP|1|X|G|1602
2ZJP|1|X|A|1603
2ZJP|1|X|A|1604
2ZJP|1|X|A|1605

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains