IL_2ZJP_117
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CCGCUG*UAUG
- Length
- 10 nucleotides
- Bulged bases
- 2ZJP|1|X|U|2706
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2ZJP_117 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3196
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
2ZJP|1|X|C|2659
2ZJP|1|X|C|2660
2ZJP|1|X|G|2661
2ZJP|1|X|C|2662
2ZJP|1|X|U|2663
2ZJP|1|X|G|2664
*
2ZJP|1|X|U|2704
2ZJP|1|X|A|2705
2ZJP|1|X|U|2706
2ZJP|1|X|G|2707
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain H
- 50S RIBOSOMAL PROTEIN L14
- Chain K
- 50S RIBOSOMAL PROTEIN L17
- Chain M
- 50S RIBOSOMAL PROTEIN L19
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