IL_3BBX_020

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

3BBX|1|B|G|801, 3BBX|1|B|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_020 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0769

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|G|674
3BBX|1|B|A|675
3BBX|1|B|A|676
3BBX|1|B|A|677
3BBX|1|B|C|678
*
3BBX|1|B|G|799
3BBX|1|B|A|800
3BBX|1|B|G|801
3BBX|1|B|A|802
3BBX|1|B|U|803
3BBX|1|B|A|804
3BBX|1|B|G|805
3BBX|1|B|C|806

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15