IL_3BBX_025

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

3BBX|1|B|G|776, 3BBX|1|B|A|788, 3BBX|1|B|A|789

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_025 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0866

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

3BBX|1|B|G|775
3BBX|1|B|G|776
3BBX|1|B|G|777
*
3BBX|1|B|C|787
3BBX|1|B|A|788
3BBX|1|B|A|789
3BBX|1|B|U|790
3BBX|1|B|C|791

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2