3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GGUAG*CGAAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3BBX_030 not in the Motif Atlas
Geometric match to IL_4V9F_033
Geometric discrepancy: 0.1397
The information below is about IL_4V9F_033
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_38862.4
Basepair signature
cWW-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

3BBX|1|B|G|858
3BBX|1|B|G|859
3BBX|1|B|U|860
3BBX|1|B|A|861
3BBX|1|B|G|862
*
3BBX|1|B|C|915
3BBX|1|B|G|916
3BBX|1|B|A|917
3BBX|1|B|A|918
3BBX|1|B|U|919

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain A
5S ribosomal RNA; 5S rRNA
Chain W
50S ribosomal protein L27

Coloring options:


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