IL_3BBX_030

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GGUAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_030 not in the Motif Atlas

Geometric match to IL_4V9F_033

Geometric discrepancy: 0.1397

The information below is about IL_4V9F_033

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3BBX|1|B|G|858
3BBX|1|B|G|859
3BBX|1|B|U|860
3BBX|1|B|A|861
3BBX|1|B|G|862
*
3BBX|1|B|C|915
3BBX|1|B|G|916
3BBX|1|B|A|917
3BBX|1|B|A|918
3BBX|1|B|U|919

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain W

50S ribosomal protein L27