IL_3BBX_040

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_040 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1034

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3BBX|1|B|G|1038
3BBX|1|B|A|1039
3BBX|1|B|A|1040
3BBX|1|B|G|1041
*
3BBX|1|B|C|1114
3BBX|1|B|G|1115
3BBX|1|B|G|1116
3BBX|1|B|C|1117

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L25