IL_3BBX_046

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

3BBX|1|B|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1485

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

3BBX|1|B|C|1208
3BBX|1|B|U|1209
3BBX|1|B|G|1210
3BBX|1|B|C|1211
3BBX|1|B|G|1212
3BBX|1|B|A|1213
3BBX|1|B|A|1214
3BBX|1|B|G|1215
*
3BBX|1|B|U|1234
3BBX|1|B|G|1235
3BBX|1|B|G|1236
3BBX|1|B|A|1237
3BBX|1|B|G|1238

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20