IL_3BBX_047

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_047 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1168

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

3BBX|1|B|C|1319
3BBX|1|B|C|1320
3BBX|1|B|A|1321
3BBX|1|B|A|1322
3BBX|1|B|C|1323
*
3BBX|1|B|G|1331
3BBX|1|B|G|1332
3BBX|1|B|G|1333

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22