IL_3BBX_069

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

3BBX|1|B|C|1838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_069 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.1404

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

3BBX|1|B|C|1837
3BBX|1|B|C|1838
3BBX|1|B|G|1839
3BBX|1|B|G|1840
*
3BBX|1|B|C|1902
3BBX|1|B|G|1903

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2