3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GC*GCAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3BBX_073 not in the Motif Atlas
Homologous match to IL_5J7L_318
Geometric discrepancy: 0.0831
The information below is about IL_5J7L_318
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

3BBX|1|B|G|1933
3BBX|1|B|C|1934
*
3BBX|1|B|G|1964
3BBX|1|B|C|1965
3BBX|1|B|A|1966
3BBX|1|B|C|1967

Current chains

Chain B
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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