3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3BBX_097 not in the Motif Atlas
Geometric match to IL_5J7L_346
Geometric discrepancy: 0.1119
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

3BBX|1|B|C|2652
3BBX|1|B|U|2653
3BBX|1|B|A|2654
3BBX|1|B|G|2655
3BBX|1|B|U|2656
3BBX|1|B|A|2657
3BBX|1|B|C|2658
*
3BBX|1|B|G|2663
3BBX|1|B|G|2664
3BBX|1|B|A|2665
3BBX|1|B|C|2666
3BBX|1|B|C|2667
3BBX|1|B|G|2668

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain G
50S ribosomal protein L6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0813 s