3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3BBX_107 not in the Motif Atlas
Homologous match to IL_5J7L_386
Geometric discrepancy: 0.0575
The information below is about IL_5J7L_386
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

3BBX|1|B|G|1666
3BBX|1|B|G|1667
3BBX|1|B|A|1668
3BBX|1|B|A|1669
3BBX|1|B|C|1670
3BBX|1|B|U|1671
3BBX|1|B|A|1672
3BBX|1|B|G|1673
3BBX|1|B|G|1674
*
3BBX|1|B|C|1990
3BBX|1|B|U|1991
3BBX|1|B|G|1992
3BBX|1|B|U|1993
3BBX|1|B|C|1994

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L14

Coloring options:


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