IL_3BBX_108

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_108 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1018

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3BBX|1|B|U|1851
3BBX|1|B|U|1852
3BBX|1|B|A|1853
3BBX|1|B|A|1854
3BBX|1|B|U|1855
3BBX|1|B|U|1856
3BBX|1|B|G|1857
3BBX|1|B|A|1858
3BBX|1|B|U|1859
3BBX|1|B|G|1860
*
3BBX|1|B|U|1882
3BBX|1|B|U|1883
3BBX|1|B|G|1884
3BBX|1|B|A|1885
3BBX|1|B|U|1886
3BBX|1|B|C|1887
3BBX|1|B|G|1888
3BBX|1|B|A|1889
3BBX|1|B|A|1890
3BBX|1|B|G|1891

Current chains

Chain B

23S ribosomal RNA

Nearby chains