IL_3BO3_001

3D structure

PDB id

3BO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCG*CAC

Length

7 nucleotides

Bulged bases

3BO3|1|B|C|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BO3_001 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.1514

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

3BO3|1|B|G|19
3BO3|1|B|C|20
3BO3|1|B|C|21
3BO3|1|B|G|22
*
3BO3|1|B|C|29
3BO3|1|B|A|30
3BO3|1|B|C|31

Current chains

Chain B

Group I intron P9

Nearby chains