IL_3BO3_010

3D structure

PDB id

3BO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGG*CCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BO3_010 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2136

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

3BO3|1|B|G|184
3BO3|1|B|U|185
3BO3|1|B|G|186
3BO3|1|B|G|187
*
3BO3|1|C|C|194
3BO3|1|C|C|195
3BO3|1|C|A|196
3BO3|1|C|C|197

Current chains

Chain B

Group I intron P9

Chain C

RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*G)-3')

Nearby chains