IL_3BWP_004

3D structure

PDB id

3BWP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a self-spliced group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*UGAAGGAAG

Length

13 nucleotides

Bulged bases

3BWP|1|A|A|105, 3BWP|1|A|A|106, 3BWP|1|A|G|107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BWP_004 not in the Motif Atlas

Geometric match to IL_3IGI_003

Geometric discrepancy: 0.1105

The information below is about IL_3IGI_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89312.1

Basepair signature

cWW-tSH-L-cWS-cWW-L

Number of instances in this motif group

1

Unit IDs

3BWP|1|A|C|76
3BWP|1|A|A|77
3BWP|1|A|A|78
3BWP|1|A|G|79
*
3BWP|1|A|U|103
3BWP|1|A|G|104
3BWP|1|A|A|105
3BWP|1|A|A|106
3BWP|1|A|G|107
3BWP|1|A|G|108
3BWP|1|A|A|109
3BWP|1|A|A|110
3BWP|1|A|G|111

Current chains

Chain A

Group IIC intron

Nearby chains