IL_3BWP_006

3D structure

PDB id

3BWP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a self-spliced group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAACACGAC*GC*GC

Length

15 nucleotides

Bulged bases

3BWP|1|A|A|144

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BWP_006 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.198

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

3BWP|1|A|G|133
3BWP|1|A|G|135
3BWP|1|A|G|136
3BWP|1|A|A|137
3BWP|1|A|A|138
3BWP|1|A|C|139
3BWP|1|A|A|140
3BWP|1|A|C|141
3BWP|1|A|G|142
3BWP|1|A|A|144
3BWP|1|A|C|145
*
3BWP|1|A|G|229
3BWP|1|A|C|230
*
3BWP|1|A|G|229
3BWP|1|A|C|230

Current chains

Chain A

Group IIC intron

Nearby chains