IL_3BWP_008

3D structure

PDB id

3BWP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a self-spliced group II intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAG*CAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BWP_008 not in the Motif Atlas

Geometric match to IL_3IGI_009

Geometric discrepancy: 0.0773

The information below is about IL_3IGI_009

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

3BWP|1|A|U|172
3BWP|1|A|G|173
3BWP|1|A|A|174
3BWP|1|A|G|175
*
3BWP|1|A|C|190
3BWP|1|A|A|191
3BWP|1|A|A|192
3BWP|1|A|A|193
3BWP|1|A|G|194

Current chains

Chain A

Group IIC intron

Nearby chains