3D structure

PDB id
3CC2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GAUGGAAG*UGGAC
Length
13 nucleotides
Bulged bases
3CC2|1|0|G|1315
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CC2_047 not in the Motif Atlas
Homologous match to IL_4V9F_048
Geometric discrepancy: 0.0208
The information below is about IL_4V9F_048
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

3CC2|1|0|G|1312
3CC2|1|0|A|1313
3CC2|1|0|U|1314
3CC2|1|0|G|1315
3CC2|1|0|G|1316
3CC2|1|0|A|1317
3CC2|1|0|A|1318
3CC2|1|0|G|1319
*
3CC2|1|0|U|1338
3CC2|1|0|G|1339
3CC2|1|0|G|1340
3CC2|1|0|A|1341
3CC2|1|0|C|1342

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain C
50S ribosomal protein L4P
Chain T
50S ribosomal protein L24P
Chain Y
50S ribosomal protein L32e

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2308 s