IL_3CC2_088

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

3CC2|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_088 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.2605

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3CC2|1|0|C|2672
3CC2|1|0|U|2673
3CC2|1|0|G|2674
3CC2|1|0|A|2675
3CC2|1|0|C|2676
*
3CC2|1|0|G|2809
3CC2|1|0|G|2810
3CC2|1|0|A|2811
3CC2|1|0|A|2812
3CC2|1|0|A|2813
3CC2|1|0|A|2814
3CC2|1|0|G|2815
3CC2|1|0|A|2816
3CC2|1|0|G|2817

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P