3D structure

PDB id
3CC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UAAUCCUCUGAAG*CCAAAAUGAUCGGGA
Length
28 nucleotides
Bulged bases
3CC4|1|0|A|1123, 3CC4|1|0|A|1231, 3CC4|1|0|U|1234
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CC4_107 not in the Motif Atlas
Homologous match to IL_4V9F_109
Geometric discrepancy: 0.027
The information below is about IL_4V9F_109
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_29826.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

3CC4|1|0|U|1122
3CC4|1|0|A|1123
3CC4|1|0|A|1124
3CC4|1|0|U|1125
3CC4|1|0|C|1126
3CC4|1|0|C|1127
3CC4|1|0|U|1128
3CC4|1|0|C|1129
3CC4|1|0|U|1130
3CC4|1|0|G|1131
3CC4|1|0|A|1132
3CC4|1|0|A|1133
3CC4|1|0|G|1134
*
3CC4|1|0|C|1228
3CC4|1|0|C|1229
3CC4|1|0|A|1230
3CC4|1|0|A|1231
3CC4|1|0|A|1232
3CC4|1|0|A|1233
3CC4|1|0|U|1234
3CC4|1|0|G|1235
3CC4|1|0|A|1236
3CC4|1|0|U|1237
3CC4|1|0|C|1238
3CC4|1|0|G|1239
3CC4|1|0|G|1240
3CC4|1|0|G|1241
3CC4|1|0|A|1242

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain B
50S ribosomal protein L3P
Chain H
50S ribosomal protein L10e
Chain J
50S ribosomal protein L13P
Chain W
50S ribosomal protein L30P

Coloring options:


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