IL_3CCL_106

3D structure

PDB id

3CCL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535C. Density for Anisomycin is visible but not included in model.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAAUCCUCUGAAG*CCAAAAUGAUCGGGA

Length

28 nucleotides

Bulged bases

3CCL|1|0|A|1123, 3CCL|1|0|A|1231, 3CCL|1|0|U|1234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCL_106 not in the Motif Atlas

Homologous match to IL_4V9F_109

Geometric discrepancy: 0.0335

The information below is about IL_4V9F_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39721.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3CCL|1|0|U|1122
3CCL|1|0|A|1123
3CCL|1|0|A|1124
3CCL|1|0|U|1125
3CCL|1|0|C|1126
3CCL|1|0|C|1127
3CCL|1|0|U|1128
3CCL|1|0|C|1129
3CCL|1|0|U|1130
3CCL|1|0|G|1131
3CCL|1|0|A|1132
3CCL|1|0|A|1133
3CCL|1|0|G|1134
*
3CCL|1|0|C|1228
3CCL|1|0|C|1229
3CCL|1|0|A|1230
3CCL|1|0|A|1231
3CCL|1|0|A|1232
3CCL|1|0|A|1233
3CCL|1|0|U|1234
3CCL|1|0|G|1235
3CCL|1|0|A|1236
3CCL|1|0|U|1237
3CCL|1|0|C|1238
3CCL|1|0|G|1239
3CCL|1|0|G|1240
3CCL|1|0|G|1241
3CCL|1|0|A|1242

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain B

50S ribosomal protein L3P

Chain H

50S ribosomal protein L10e

Chain J

50S ribosomal protein L13P

Chain W

50S ribosomal protein L30P