3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUGAC*GGAAAAGAG
Length
14 nucleotides
Bulged bases
3CCQ|1|0|G|2815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CCQ_088 not in the Motif Atlas
Geometric match to IL_5J7L_345
Geometric discrepancy: 0.2671
The information below is about IL_5J7L_345
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

3CCQ|1|0|C|2672
3CCQ|1|0|U|2673
3CCQ|1|0|G|2674
3CCQ|1|0|A|2675
3CCQ|1|0|C|2676
*
3CCQ|1|0|G|2809
3CCQ|1|0|G|2810
3CCQ|1|0|A|2811
3CCQ|1|0|A|2812
3CCQ|1|0|A|2813
3CCQ|1|0|A|2814
3CCQ|1|0|G|2815
3CCQ|1|0|A|2816
3CCQ|1|0|G|2817

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain B
50S ribosomal protein L3P
Chain J
50S ribosomal protein L13P

Coloring options:


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