IL_3CCR_047

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUGGAAG*UGGAC

Length

13 nucleotides

Bulged bases

3CCR|1|0|G|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCR_047 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.0562

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

3CCR|1|0|G|1312
3CCR|1|0|A|1313
3CCR|1|0|U|1314
3CCR|1|0|G|1315
3CCR|1|0|G|1316
3CCR|1|0|A|1317
3CCR|1|0|A|1318
3CCR|1|0|G|1319
*
3CCR|1|0|U|1338
3CCR|1|0|G|1339
3CCR|1|0|G|1340
3CCR|1|0|A|1341
3CCR|1|0|C|1342

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain Y

50S ribosomal protein L32e