IL_3CCR_108

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAUCCUCUGAAG*CCAAAAUGAUCGGGA

Length

28 nucleotides

Bulged bases

3CCR|1|0|A|1123, 3CCR|1|0|A|1231, 3CCR|1|0|U|1234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCR_108 not in the Motif Atlas

Homologous match to IL_4V9F_109

Geometric discrepancy: 0.0482

The information below is about IL_4V9F_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39721.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3CCR|1|0|U|1122
3CCR|1|0|A|1123
3CCR|1|0|A|1124
3CCR|1|0|U|1125
3CCR|1|0|C|1126
3CCR|1|0|C|1127
3CCR|1|0|U|1128
3CCR|1|0|C|1129
3CCR|1|0|U|1130
3CCR|1|0|G|1131
3CCR|1|0|A|1132
3CCR|1|0|A|1133
3CCR|1|0|G|1134
*
3CCR|1|0|C|1228
3CCR|1|0|C|1229
3CCR|1|0|A|1230
3CCR|1|0|A|1231
3CCR|1|0|A|1232
3CCR|1|0|A|1233
3CCR|1|0|U|1234
3CCR|1|0|G|1235
3CCR|1|0|A|1236
3CCR|1|0|U|1237
3CCR|1|0|C|1238
3CCR|1|0|G|1239
3CCR|1|0|G|1240
3CCR|1|0|G|1241
3CCR|1|0|A|1242

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain B

50S ribosomal protein L3P

Chain H

50S ribosomal protein L10e

Chain J

50S ribosomal protein L13P

Chain W

50S ribosomal protein L30P