IL_3CD6_107
3D structure
- PDB id
- 3CD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UAAUCCUCUGAAG*CCAAAAUGAUCGGGA
- Length
- 28 nucleotides
- Bulged bases
- 3CD6|1|0|A|1123, 3CD6|1|0|A|1231, 3CD6|1|0|U|1234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CD6_107 not in the Motif Atlas
- Homologous match to IL_4V9F_109
- Geometric discrepancy: 0.0353
- The information below is about IL_4V9F_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39721.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3CD6|1|0|U|1122
3CD6|1|0|A|1123
3CD6|1|0|A|1124
3CD6|1|0|U|1125
3CD6|1|0|C|1126
3CD6|1|0|C|1127
3CD6|1|0|U|1128
3CD6|1|0|C|1129
3CD6|1|0|U|1130
3CD6|1|0|G|1131
3CD6|1|0|A|1132
3CD6|1|0|A|1133
3CD6|1|0|G|1134
*
3CD6|1|0|C|1228
3CD6|1|0|C|1229
3CD6|1|0|A|1230
3CD6|1|0|A|1231
3CD6|1|0|A|1232
3CD6|1|0|A|1233
3CD6|1|0|U|1234
3CD6|1|0|G|1235
3CD6|1|0|A|1236
3CD6|1|0|U|1237
3CD6|1|0|C|1238
3CD6|1|0|G|1239
3CD6|1|0|G|1240
3CD6|1|0|G|1241
3CD6|1|0|A|1242
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 50S ribosomal protein L3P
- Chain H
- 50S ribosomal protein L10e
- Chain J
- 50S ribosomal protein L13P
- Chain W
- 50S ribosomal protein L30P
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