IL_3CF5_014

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

3CF5|1|X|G|814, 3CF5|1|X|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_014 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.1139

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

3CF5|1|X|G|687
3CF5|1|X|A|688
3CF5|1|X|A|689
3CF5|1|X|A|690
3CF5|1|X|C|691
*
3CF5|1|X|G|812
3CF5|1|X|A|813
3CF5|1|X|G|814
3CF5|1|X|A|815
3CF5|1|X|U|816
3CF5|1|X|A|817
3CF5|1|X|G|818
3CF5|1|X|C|819

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain I

50S RIBOSOMAL PROTEIN L15