IL_3CF5_038

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

3CF5|1|X|U|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_038 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2426

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

3CF5|1|X|G|1070
3CF5|1|X|U|1071
3CF5|1|X|U|1072
3CF5|1|X|G|1073
*
3CF5|1|X|C|1087
3CF5|1|X|A|1088
3CF5|1|X|C|1089
3CF5|1|X|C|1090

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain F

50S RIBOSOMAL PROTEIN L11

Chain J

50S RIBOSOMAL PROTEIN L16

Chain S

50S RIBOSOMAL PROTEIN L25