IL_3CF5_043

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

3CF5|1|X|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_043 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.0934

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

3CF5|1|X|C|1221
3CF5|1|X|G|1222
3CF5|1|X|G|1223
3CF5|1|X|A|1224
3CF5|1|X|G|1225
3CF5|1|X|A|1226
3CF5|1|X|A|1227
3CF5|1|X|G|1228
*
3CF5|1|X|U|1247
3CF5|1|X|G|1248
3CF5|1|X|G|1249
3CF5|1|X|A|1250
3CF5|1|X|G|1251

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L15

Chain N

50S RIBOSOMAL PROTEIN L20

Chain P

50S RIBOSOMAL PROTEIN L22