IL_3CF5_050

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_050 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.4443

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_28245.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3CF5|1|X|U|1426
3CF5|1|X|G|1427
3CF5|1|X|G|1428
3CF5|1|X|A|1429
3CF5|1|X|G|1430
*
3CF5|1|X|C|1598
3CF5|1|X|G|1599
3CF5|1|X|U|1600
3CF5|1|X|U|1601
3CF5|1|X|G|1602
3CF5|1|X|A|1603
3CF5|1|X|A|1604
3CF5|1|X|A|1605

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains