IL_3CF5_062

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

3CF5|1|X|C|1792, 3CF5|1|X|C|1808, 3CF5|1|X|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_062 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1085

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3CF5|1|X|U|1789
3CF5|1|X|G|1790
3CF5|1|X|C|1791
3CF5|1|X|C|1792
3CF5|1|X|A|1793
3CF5|1|X|A|1794
3CF5|1|X|C|1795
*
3CF5|1|X|G|1805
3CF5|1|X|G|1806
3CF5|1|X|A|1807
3CF5|1|X|C|1808
3CF5|1|X|G|1809
3CF5|1|X|U|1810
3CF5|1|X|A|1811
3CF5|1|X|U|1812
3CF5|1|X|A|1813

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2