IL_3CF5_093

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

3CF5|1|X|U|2668, 3CF5|1|X|C|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_093 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1437

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

3CF5|1|X|U|2666
3CF5|1|X|C|2667
3CF5|1|X|U|2668
3CF5|1|X|C|2669
3CF5|1|X|C|2670
*
3CF5|1|X|G|2698
3CF5|1|X|G|2699
3CF5|1|X|U|2700
3CF5|1|X|A|2701
3CF5|1|X|G|2702

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L17

Chain M

50S RIBOSOMAL PROTEIN L19