IL_3CF5_111

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CF5_111 not in the Motif Atlas

Geometric match to IL_7A0S_109

Geometric discrepancy: 0.0911

The information below is about IL_7A0S_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

3CF5|1|X|G|1683
3CF5|1|X|G|1684
3CF5|1|X|A|1685
3CF5|1|X|A|1686
3CF5|1|X|C|1687
3CF5|1|X|U|1688
3CF5|1|X|U|1689
3CF5|1|X|U|1690
3CF5|1|X|G|1691
*
3CF5|1|X|C|1973
3CF5|1|X|U|1974
3CF5|1|X|G|1975
3CF5|1|X|U|1976
3CF5|1|X|C|1977

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain H

50S RIBOSOMAL PROTEIN L14