IL_3CMA_001
3D structure
- PDB id
- 3CMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGGAUU*AUGAAAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CMA_001 not in the Motif Atlas
- Homologous match to IL_4V9F_001
- Geometric discrepancy: 0.0439
- The information below is about IL_4V9F_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
3CMA|1|0|G|21
3CMA|1|0|U|22
3CMA|1|0|G|23
3CMA|1|0|G|24
3CMA|1|0|A|25
3CMA|1|0|U|26
3CMA|1|0|U|27
*
3CMA|1|0|A|516
3CMA|1|0|U|517
3CMA|1|0|G|518
3CMA|1|0|A|519
3CMA|1|0|A|520
3CMA|1|0|A|521
3CMA|1|0|U|522
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4P
- Chain R
- 50S ribosomal protein L22P
- Chain Y
- 50S ribosomal protein L32e
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