IL_3CMA_088

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

3CMA|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CMA_088 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.2651

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3CMA|1|0|C|2672
3CMA|1|0|U|2673
3CMA|1|0|G|2674
3CMA|1|0|A|2675
3CMA|1|0|C|2676
*
3CMA|1|0|G|2809
3CMA|1|0|G|2810
3CMA|1|0|A|2811
3CMA|1|0|A|2812
3CMA|1|0|A|2813
3CMA|1|0|A|2814
3CMA|1|0|G|2815
3CMA|1|0|A|2816
3CMA|1|0|G|2817

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P