IL_3CMA_107
3D structure
- PDB id
- 3CMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- UAAUCCUCUGAAG*CCAAAAUGAUCGGGA
- Length
- 28 nucleotides
- Bulged bases
- 3CMA|1|0|A|1123, 3CMA|1|0|A|1231, 3CMA|1|0|U|1234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3CMA_107 not in the Motif Atlas
- Homologous match to IL_4V9F_109
- Geometric discrepancy: 0.0485
- The information below is about IL_4V9F_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39721.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3CMA|1|0|U|1122
3CMA|1|0|A|1123
3CMA|1|0|A|1124
3CMA|1|0|U|1125
3CMA|1|0|C|1126
3CMA|1|0|C|1127
3CMA|1|0|U|1128
3CMA|1|0|C|1129
3CMA|1|0|U|1130
3CMA|1|0|G|1131
3CMA|1|0|A|1132
3CMA|1|0|A|1133
3CMA|1|0|G|1134
*
3CMA|1|0|C|1228
3CMA|1|0|C|1229
3CMA|1|0|A|1230
3CMA|1|0|A|1231
3CMA|1|0|A|1232
3CMA|1|0|A|1233
3CMA|1|0|U|1234
3CMA|1|0|G|1235
3CMA|1|0|A|1236
3CMA|1|0|U|1237
3CMA|1|0|C|1238
3CMA|1|0|G|1239
3CMA|1|0|G|1240
3CMA|1|0|G|1241
3CMA|1|0|A|1242
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 50S ribosomal protein L3P
- Chain H
- 50S ribosomal protein L10e
- Chain J
- 50S ribosomal protein L13P
- Chain W
- 50S ribosomal protein L30P
Coloring options: