IL_3CME_107

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCUU*ACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CME_107 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.1645

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

3CME|1|0|C|557
3CME|1|0|C|558
3CME|1|0|U|559
3CME|1|0|U|560
*
3CME|1|0|A|597
3CME|1|0|C|598
3CME|1|0|G|599
3CME|1|0|G|600

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain Y

50S ribosomal protein L32e