IL_3CPW_049

3D structure

PDB id

3CPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AUAGUAG*UGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CPW_049 not in the Motif Atlas

Homologous match to IL_4V9F_049

Geometric discrepancy: 0.0308

The information below is about IL_4V9F_049

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

3CPW|1|0|A|1367
3CPW|1|0|U|1368
3CPW|1|0|A|1369
3CPW|1|0|G|1370
3CPW|1|0|U|1371
3CPW|1|0|A|1372
3CPW|1|0|G|1373
*
3CPW|1|0|U|2052
3CPW|1|0|G|2053
3CPW|1|0|A|2054
3CPW|1|0|A|2055
3CPW|1|0|C|2056
3CPW|1|0|U|2057

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain Q

50S ribosomal protein L22P